Models
Education and learner development
Education-facing overview of MERIT and COMPASS training models.
Frameworks
Models that structure the canonical open connectomics course and adjacent programming.
Frameworks define how the broader NeuroTrailblazers experience and the technical connectomics track fit together across mentoring, curriculum design, and learner progression.
Research Incubator Model
Program and curriculum design
Overview of the MERIT, COMPASS, and CCR frameworks guiding NeuroTrailblazers training.
Technical Track Progression
Canonical open connectomics course that complements the broader NeuroTrailblazers site.
1. Why Map the Brain
01-why-map-the-brain
Current coverage: module01
Supporting frameworks: Models, Research Incubator Model
Primary overlap with orientation, motivation, and connectomics purpose.
2. Brain Data Across Scales
02-brain-data-across-scales
Current coverage: module04, module05, module12
Coverage split across neuroanatomy, EM imaging basics, and data scale.
3. EM Prep and Imaging
03-em-prep-and-imaging
Current coverage: module05
Current overlap centers on EM principles and image interpretation.
4. Volume Reconstruction Infrastructure
04-volume-reconstruction-infrastructure
Current coverage: module12, module18
Partial overlap through big-data systems and preprocessing pipelines.
5. Neuronal Ultrastructure
05-neuronal-ultrastructure
Current coverage: module04, module09, module11
Distributed overlap across neuroanatomy, morphology, and synaptic logic.
6. Axons and Dendrites
06-axons-and-dendrites
Current coverage: module04, module09
Current treatment appears in structural neuroanatomy and morphology modules.
7. Glia
07-glia
Current coverage: module04
Only partial coverage currently; likely a strong candidate for dedicated content.
8. Segmentation and Proofreading
08-segmentation-and-proofreading
Current coverage: module06, module07
Direct overlap with existing segmentation and quality-control sequence.
9. Connectome Analysis and NeuroAI
09-connectome-analysis-neuroai
Current coverage: module10, module13, module14, module15, module20
Strong overlap across graph analysis, ML, CV, LLM, and inference modules.
10. Atlas Connectomics Reference
atlas-connectomics-reference
Current coverage: Planned content
No direct equivalent yet; best handled as dedicated reference content.
Technical Connectomics Track (Planned)
Canonical open connectomics course that complements the broader NeuroTrailblazers site.
-
Why Map the Brain
(01-why-map-the-brain)
Current coverage: module01
Primary overlap with orientation, motivation, and connectomics purpose. -
Brain Data Across Scales
(02-brain-data-across-scales)
Current coverage: module04, module05, module12
Coverage split across neuroanatomy, EM imaging basics, and data scale. -
EM Prep and Imaging
(03-em-prep-and-imaging)
Current coverage: module05
Current overlap centers on EM principles and image interpretation. -
Volume Reconstruction Infrastructure
(04-volume-reconstruction-infrastructure)
Current coverage: module12, module18
Partial overlap through big-data systems and preprocessing pipelines. -
Neuronal Ultrastructure
(05-neuronal-ultrastructure)
Current coverage: module04, module09, module11
Distributed overlap across neuroanatomy, morphology, and synaptic logic. -
Axons and Dendrites
(06-axons-and-dendrites)
Current coverage: module04, module09
Current treatment appears in structural neuroanatomy and morphology modules. -
Glia
(07-glia)
Current coverage: module04
Only partial coverage currently; likely a strong candidate for dedicated content. -
Segmentation and Proofreading
(08-segmentation-and-proofreading)
Current coverage: module06, module07
Direct overlap with existing segmentation and quality-control sequence. -
Connectome Analysis and NeuroAI
(09-connectome-analysis-neuroai)
Current coverage: module10, module13, module14, module15, module20
Strong overlap across graph analysis, ML, CV, LLM, and inference modules. -
Atlas Connectomics Reference
(atlas-connectomics-reference)
No direct equivalent yet; best handled as dedicated reference content.