Session profile
- Audience: learners who will design or evaluate cross-scale studies.
- Duration: 75 minutes lecture + 15 minutes exercise.
- Output: scale selection worksheet for one research question.
Slide-by-slide lecture plan
- Slide 1 (2 min): Title and unit objective
- Slide 2 (5 min): Why scale is a technical, not cosmetic, choice
- Slide 3 (6 min): Modality ladder
- Macro to nano; what each tier can resolve.
- Slide 4 (6 min): Acquisition scale vs analysis scale
- Common mismatch patterns and consequences.
- Slide 5 (6 min): Representation stack
- Volumes, segments, skeletons, meshes, graphs.
- Slide 6 (6 min): Registration fundamentals
- Transform classes and uncertainty propagation.
- Slide 7 (6 min): Anisotropy and sampling artifacts
- Why isotropic assumptions fail.
- Slide 8 (6 min): Compute/storage implications by scale
- I/O, memory, and indexing costs.
- Slide 9 (7 min): Worked case
- Same hypothesis evaluated at two scales, different conclusions.
- Slide 10 (5 min): Cross-scale provenance
- Required metadata for reproducible linkage.
- Slide 11 (5 min): Failure modes
- Scale leakage, over-registration confidence, representation collapse.
- Slide 12 (5 min): Protocol checklist
- Minimal sufficient scale decision template.
- Slide 13 (5 min): Activity
- Pick one question and defend your chosen scale.
- Slide 14 (5 min): Bridge to acquisition quality in Unit 03.
- Primary shortlist:
course/units/figures/02-brain-data-across-scales-selected-v1.md.
- Must include one panel showing representation conversion and one showing registration residuals.
Speaker notes (expert-level)
- Quantify tradeoffs whenever possible (resolution vs volume vs cost).
- Highlight how scale-dependent uncertainty should be reported in final claims.
Assessment and artifacts
- Deliverable: scale-aware study design card.
- Rubric dimensions: feature resolvability, transform traceability, and resource realism.
Connections
Slide source file
- Marp draft source:
course/decks/marp/02-brain-data-across-scales.marp.md
- Batch render helper:
./scripts/render_marp.sh