Module 04: Neuroanatomy for Connectomics

Teaching Deck

Learning Objectives

• Identify major neuroanatomical compartments relevant to connectomics
• Relate anatomical context to interpretation of local EM structures
• Use region/layer context to avoid misclassification
• Communicate anatomy-based uncertainty clearly

Session Outcomes

• Learners can complete the module capability target.
• Learners can produce one evidence-backed artifact.
• Learners can state one limitation or uncertainty.

Agenda (60 min)

• 0-10 min: Frame and model
• 10-35 min: Guided practice
• 35-50 min: Debrief and misconception correction
• 50-60 min: Competency check + exit ticket

Capability Target

Interpret a local EM region using correct anatomical context and document one confident and one uncertain structural call.

Concept Focus

• Region/layer context affects interpretation.
• Local morphology needs cross-slice and cross-region checks.
• Uncertainty should be explicit when anatomy is ambiguous.

Core Workflow

• Identify anatomical region/layer.
• Map candidate structures to known context.
• Cross-check with neighboring slices.
• Annotate confidence and escalation path.

60-Minute Run-of-Show

• 00:00-10: macro-to-micro anatomy bridge.
• 10:00-24: guided structural identification.
• 24:00-38: ambiguity case discussion.
• 38:00-50: learner annotation round.
• 50:00-60: debrief and competency check.

Misconceptions to Watch

• Surface and correct one likely misconception during debrief.

Studio Activity

Label one patch set with anatomy context, structure call, and confidence rationale.

Activity Output Checklist

• Evidence-linked artifact submitted.
• At least one limitation or uncertainty stated.
• Revision point captured from feedback.

Assessment Rubric

• Minimum: context-aware call and confidence note.
• Strong: clear rationale with cross-slice checks.
• Failure: isolated local cue overconfidence.

Exit Ticket

Describe one case where anatomy context changes your interpretation.

References (Instructor)

• Use module references listed on the module page.

Teaching Materials

• Module page: /modules/module04/
• Slide page: /modules/slides/module04/
• Worksheet: /assets/worksheets/module04/module04-activity.md